S_beeni's blog
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์˜ค๋ž„๋น„io ์‹œ๋ฆฌ์ฆˆ ๋ฐฐํ„ฐ๋ฆฌ ๊ต์ฒด ํ›„๊ธฐ

22๋…„์— ์‚ฐ ์˜ค๋ž„๋น„ io9์ด ์ ์  ๋ง›์ด ๊ฐ€๊ณ  ์žˆ๋‹ค. ๋ฏธ๊ตญ์—์„œ ๋‘์ง‘์‚ด๋ฆผ์„ 6๊ฐœ์›”๊ฐ„ ํ•˜๋ฉด์„œ ์‚ฌ์šฉ๋Ÿ‰์ด ์ ์–ด์ง€๊ณ  ๋งŽ๊ฒŒ๋Š” ๋ช‡์ฃผ๋™์•ˆ ๋ฐฉ์ „์‹œํ‚จ์ฑ„๋กœ ์•ˆ์“ฐ๋‹ค๋ณด๋‹ˆ๊นŒ ๋ฐฐํ„ฐ๋ฆฌ์ˆ˜๋ช…์ด ๊ฐ€์…จ๋‚˜๋ณด๋”๋ผ ๋ฉฐ์น  ์•ˆ์จ๋„ ๋ฐฐํ„ฐ๋ฆฌ๊ฐ€ ๊ธˆ๋ฐฉ ๋‹ณ๊ณ , ์ถฉ์ „์‹œ๊ฐ„๋„ ์˜ˆ์ „๋ณด๋‹ค ํ›จ์”ฌ ๊ธธ์–ด์ ธ์„œ ํ•˜๋ฃจ์ข…์ผ ์Šคํ…Œ์ด์…˜์— ์˜ฌ๋ ค๋‘ฌ์•ผํ•˜๋Š” ์ •๋„๊ฐ€ ๋ผ์„œ ๋ถˆํŽธํ•จ์„ ๋А๋ผ๊ธฐ ์‹œ์ž‘ํ–ˆ๋‹ค. ์ƒˆ๋กœ ์‚ด๊นŒ ํ•˜๋‹ค๊ฐ€ ๋ฏธ๊ตญ์ธ์ฒ˜๋Ÿผ ๊ณ ์ณ๋ณด...

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[QC] Scrublet: doublet ์ œ๊ฑฐ๋ฒ• 02

์ง€๋‚œ๋ฒˆ ํฌ์ŠคํŒ…์—์„œ๋Š” DoubletFinder๋กœ Doublet์ฐพ๋Š” ๋ฐฉ๋ฒ•์„ ์•Œ์•„๋ดค๋Š”๋ฐ.. Doublet์ด ๋ญ”์ง€, DoubletFinder ์‚ฌ์šฉ๋ฒ• ๐Ÿ‘‰ [QC] DoubletFinder: doublet ์ œ๊ฑฐ๋ฒ• 01 ํฌ์ŠคํŠธ ์ฐธ์กฐ ์ด๋ฒˆ์—๋Š” ๋น„์Šทํ•˜์ง€๋งŒ ๋‹ค๋ฅธํˆด,Scrublet,๋กœ ๋˜‘๊ฐ™์ด Doublet์„ ์ฐพ์•„๋ณด๊ณ  DoubletFinder๊ฒฐ๊ณผ๋ž‘ ๋น„๊ตํ•ด๋ณด...

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[ํ•„๋ฆฌ ๋ง›์ง‘] Frozen: ์ฐจ์ด๋‚˜ํƒ€์šด ์ฒ ํŒ์•„์ด์Šคํฌ๋ฆผ

์˜ค๋Š˜์€!! ํ•„๋ฆฌ ๋””์ €ํŠธ ๋ง›์ง‘ ์†Œ๊ฐœํŽธ! ์•„์ด์Šคํฌ๋ฆผ ๋ง›์ง‘! โ„๏ธFrozenโ„๏ธ ํ•œ๊ตญ์€ ์ฒ ํŒ์•„์ด์Šคํฌ๋ฆผ ์œ ํ–‰์ด ์ง€๋‚œ์ง€ ํ•œ์ฐธ๋œ๊ฒƒ ๊ฐ™์€๋ฐ ์‚ฌ์‹ค ๋‚˜๋„ ์œ ํŠœ๋ธŒ์—์„œ ์žฅ๋‚œ์น˜๋Š”๊ฒƒ๋งŒ ๋ดค์ง€ ์‹ค์ œ๋กœ ๊ฐ€๊ฒŒ์—์„œ ํŒŒ๋Š”๊ฑด ๋ณธ์ ์ด ์—†์Œ. ์ฝœ๋“œ์Šคํ†ค ์ œ์™ธ ํ•„๋ฆฌ์—๋Š” ์ฒ ํŒ์•„์ด์Šคํฌ๋ฆผ ๊ฐ€๊ฒŒ๋“ค์ด ๊ฝค์žˆ๋‹ค. ๋ช‡๊ตฐ๋ฐ ๊ฐ€๋ดค๋Š”๋ฐ ์ฒ ํŒ์•„์ด์Šคํฌ๋ฆผ์€ ์ด์ง‘์ด ์ œ์ผ ๋ง›์žˆ๋Š”๋“ฏ๐Ÿง๐Ÿง Frozen - Rolle...

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[๋ฏธ๊ตญ ์ ์‘๊ธฐ] ๋Œ€ํ•œํ•ญ๊ณต ์Šค์นด์ดํŒจ์Šค ๋น„์ž ์นด๋“œ ๋ฐœ๊ธ‰ํ›„๊ธฐ

๋ฏธ๊ตญ์— ์˜จ์ง€ 6๊ฐœ์›”์ฏค๋˜๋‹ˆ ์ข€ ๋” ํ˜œํƒ์ด ์žˆ๋Š” ์นด๋“œ๊ฐ€ ์“ฐ๊ณ  ์‹ถ์–ด์กŒ๋‹ค. ๊ทธ ์ „๋ถ€ํ„ฐ ์•„๋งˆ์กดํ”„๋ผ์ž„, ์ƒคํŒŒ์ด์–ด ๋ญ์‹œ๊นฝ ๋“ฑ๋“ฑ ์—ฌ๋Ÿฌ๊ตฐ๋ฐ๋ฅผ ๋‘๋“œ๋ ค๋ดค์ง€๋งŒ ์•„์ง ์‹ ์šฉ์ด ์ƒ๊ธด ๊ธฐ๊ฐ„์ด ์งง๋‹ค๋Š” ์ด์œ ๋กœ ์ž๊พธ ๋น ๊พธ๋ฅผ ๋จน์—ˆ๋‹ค. ์ด๋Ÿฐ ์‹คํŒจ๊ฐ€ ์Œ“์ด๋ฉด ์‹ ์šฉ์ ์ˆ˜๊ฐ€ ๋” ๋–จ์–ด์ง„๋‹ค ์กฐ์‹ฌํ•˜์ž ๋‚ด๋…„์— ํ•œ๊ตญ์— ์ž ๊น ๋“ค์–ด๊ฐ”๋‹ค์˜ฌ ๊ณ„ํš์ด ์žกํžŒ ๋’ค๋ถ€ํ„ฐ๋Š” ๊ฐ•๋ ฅํ•˜๊ฒŒ ๋Œ€ํ•œํ•ญ๊ณต ๋งˆ์ผ๋ฆฌ์ง€๋งˆ ๋ฐ”๋กœ ์Œ“์ด๋Š” ๐ŸŒˆ...

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[๋‰ด์š• ํƒˆ์ถœ๊ธฐ] ๋‰ด์š•์—์„œ ํ•„๋ผ๋ธํ”ผ์•„๋กœ ์ด์‚ฌํ•˜๊ธฐ: piece of cake ํ›„๊ธฐ

๋‰ด์š• ์‚ฌ์‹œ๋Š” ๋ถ„ ์ค‘, ์œ„์— ๊ทธ๋ฆผ ๊ฐ™์€ ํ•‘ํฌ ํŠธ๋Ÿญ์„ ๋ณด์‹  ๋ถ„์ด ์žˆ์„๊นŒ์š”? ๋ญ ์•ž์— ๊ณผ์ •์ด ๋งŽ์•˜๋Š”๋ฐ ์˜ค๋Š˜์€ ์ธ์Šคํƒ€์—์„œ ๋ฏธ์นœ๋“ฏ์ด ๊ด‘๊ณ ๋ฅผ ๋•Œ๋ฆฌ๋Š” Piece of cake(ํ”ผ์Šค์˜ค๋ธŒ์ผ€์ดํฌ)๋กœ ์ด์‚ฌํ•œ ํ›„๊ธฐ๋ฅผ ๊ณต์œ ํ•ด๋ณผ๊นŒํ•จ. ๐Ÿ’จ๐Ÿ’จ๐Ÿ’จ ๋‰ด์š•์—์„œ ์‚ถ์ด ๋‚˜์˜์ง„ ์•Š์•˜์ง€๋งŒ ํ•„๋ฆฌ๋กœ ์ด์‚ฌ๊ฐ€๊ธฐ๋กœ ๊ฒฐ์ •ํ–ˆ๊ณ  ์ง‘๊ณ„์•ฝ๊ณผ ๋™์‹œ์— ์—ฌ๋Ÿฌ๊ฐ€์ง€ ์ด์‚ฌ ๋ฐฉ๋ฒ•์„ ๋ณด๊ธฐ ์‹œ์ž‘ํ–ˆ๋Š”๋ฐ.. ๋ณดํ†ต ๋ฏธ๊ตญ ์‚ฌ...

jupyter notebook: conda๋กœ ์„ค์น˜ํ•˜๊ธฐ

์„œ๋ฒ„์—์„œ ๋‚ด conda env ์‚ฌ์šฉํ•ด์„œ jupyter notebook์“ฐ๊ณ  ์‹ถ์€๋ฐ ๋‚ด ํ™˜๊ฒฝ์—๋Š” jupyter๊ฐ€ ์„ค์น˜๊ฐ€ ์•ˆ๋ผ์žˆ๋„น ์ ฑ์Ÿ ์„ค์น˜ํ•ด ์„ค์น˜ํ•ด ์ง„ํ–‰์‹œ์ผœ ๐Ÿ‘‰ Anaconda jupyter page ํ™˜๊ฒฝ ๋จผ์ € activate ์‹œ์ผœ์ฃผ๊ณ  ์‹œ์ž‘ ๐Ÿ‘‰ Anaconda ๊น”๊ณ  env ๋งŒ๋“œ๋Š”๋ฒ• ํฌ์ŠคํŠธ conda install -c conda-forge...

Seurat version5 ๋‹ค๋ฅธ ํฌ๋งท์œผ๋กœ ๋ณ€ํ™˜ SingleCellExperiment, loom, h5ad

Seurat Version 5๊ฐ€ ๋‚˜์˜จ์ง€๋„ ๋ฐ˜๋…„์ด ๋ผ๊ฐ€๋Š”๊ฑฐ ๊ฐ™์€๋ฐ ์•„์ง๋„ ๊ณผ๋„๊ธฐ๋А๋‚Œ์ด ๋‚˜๋Š” ๋ฒ„๊ทธ๋ž‘ competible issue๊ฐ€ ๊ณ„์† ๋ณด์ธ๋‹ค. ์•„์ง๊นŒ์ง€ ๋‹ค๋ฅธ tool๋“ค์ด seurat verion 5๋ฅผ ์ง€์›ํ•˜๊ณ  ์žˆ์ง€ ์•Š๊ธฐ ๋•Œ๋ฌธ์— (๋‚œ ์–ธ์ œ ๋”ฑ ๋งž๊ฒŒ ์ž˜ ๋Œ์•„๊ฐ€๋Š” ํˆด์„ ์ฐพ์„๊นŒใ…‹ใ…‹ Seurat 3์—…๋Žƒ๋• 2๋ฐ–์— ์ง€์›์•ˆํ•ด์„œ ๋น„์Šทํ•œ struggling์„ ๊ฒช๊ณ  ใ…‚...

GCC install from source code

ํ›„ํ›„ ์–ด๋А๋‚  ๊ฐ‘์ž๊ธฐ ๋ฐ‘๋ฐ”๋‹ฅ๋ถ€ํ„ฐ ๋‹ค์‹œ ์‹œ์ž‘ํ•˜๋ผ๊ณ  ํ•˜๋ฉด ์ด๋Ÿฐ ๊ธฐ๋ถ„์ผ๊นŒ. ์–ด์จŒ๋“  ๋˜ gcc๋ถ€ํ„ฐ ์„ค์น˜ํ•˜๋Š” ๋ถˆ์ƒ์‚ฌ๊ฐ€ ๋‚˜์—๊ฒŒ ์ฐพ์•„์™”๋‹ค. ์˜ค๋Š˜๋„ ํž˜๋‚ด๋ณด์ž. ํ•œ๋ฒˆ ํ• ๋•Œ ์ž˜ํ•˜์ž. ๐Ÿ‘‰ GCC homepage wget https://ftp.gnu.org/gnu/gcc/gcc-13.2.0/gcc-13.2.0.tar.gz tar gcc-13.2.0.tar...

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